Description:DNA sequence correlations
Abstract:The Correlizer application creates a template file which calculates the concentration profile of single nucleotides along the DNA sequence. This can then be used by the canalyzer application to determine the local correlation coefficient for a specific range and nucleotides from the template results, for instance. For the EDGeS project we only devoted work for the Correlizer application because this needs to run on grid infrastructures and the necessary modules for the backend system to be able to work with the middlewares used on the EDGeS platform on our end.
The application was ported within the framework of the FP7 EDGeS project.