Description:Command line interface for running bowtie2 jobs in ARC based grids
Abstract:Grid_bowtie2 is a command line interface that allows running easy distributed bowtie2 NGS read mapping jobs in ARC based grid environments.
This command line interface splits the bowtie2 job into hundreds of sub-tasks, executes the sub-tasks in a grid environment and finally merges the
the results of the sub-tasks into one alignment file.
At the moment the tool is in use in FGI grid, but it can utilize any ARC based grid environment.
More information: https://research.csc.fi/-/bowtie2