Software NAMD | EGI Applications Database

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Name:NAMD

Description:NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for highperformance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on highend parallel platforms and tens of processors on commodity clusters using gigabit ethernet. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also filecompatible with AMBER, CHARMM, and XPLOR. NAMD is distributed free of charge with source code.

Abstract:NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for highperformance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on highend parallel platforms and tens of processors on commodity clusters using gigabit ethernet. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also filecompatible with AMBER, CHARMM, and XPLOR. NAMD is distributed free of charge with source code.