Software P-MLM | EGI Applications Database

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Applications Database
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Applications Database
Supporting
Applications Database
Supporting
Applications Database
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Name:P-MLM

Description:Parallel Multi Level Model

Abstract:A new method the Multi Layer Model (MLM) (Corona et. Al.) for the analysis of DNA microarray has been parallelized on high performance computer system. Up to now optimized serial implementations of MLM is not feasible to analyse very large sets of microarrays (e.g for 100 microarray of 4x10^5 spots requires about 3 days of computation on a 3GHz INTEL XEON). Taking in account of the overhead due to the information exchange in the shared regions the estimated total computation time for a data set of 4x10^7 microarray spots is 120minutes (speedup of about 35). Software requirements: MatLab 6.0, C+MPI^