Virtual Appliance Bacterial Genomics 1.3 | EGI Applications Database

Applications Database
Supporting
Applications Database
Supporting
Applications Database
Supporting
Applications Database
Supporting
Applications Database
Supporting

Click to visit the AppDB VMOps Dashboard for deploying and managing Virtual Machines to the EGI Cloud infrastructure.read more

.noscript.softwareentry {display: block;width: 1000px;}.noscript.softwareentry .field {display: block;padding-bottom: 0.5em;padding-left: 10em;width: auto;text-align:left;}.noscript.softwareentry .field .fieldtype {color: #444444;display: inline-block;font-weight: bold;min-width: 90px;vertical-align: top;width: 90px;}.noscript.softwareentry .field .fieldvalue {display: inline-block;max-width: 780px;text-align:left;}.noscript.softwareentry .field.image {height: 100px;left: -110px;position: absolute;top: 0;width: 100px;.height: 100px;border:none;}

Name:Bacterial Genomics 1.3

Description:Development in progress by two nodes of the French Institute of Bioinformatics, MIGALE and IFB-core

Abstract: The team of the IFB-MIGALE platform (one of the bioinformatics platforms of the IFB) developed an environment for the annotation of microbial genomes and a tool for the visualization of the synteny (local conservation of the gene order along the genomes). The platform automatically launches a set of bioinformatics tools (e.g. BLAST , PSI-BLAST , INTERPROScan ) to analyse the data and stores the results of the tools in a relational database (PostgreSQL). These tools use several public reference data collections. A web interface allows the user to consult the results and perform the manual annotation (manual annotation means adding manually metadata and biological knowledge to the genome sequence).